diff options
| author | sotech117 <michael_foiani@brown.edu> | 2024-05-02 19:29:49 -0400 |
|---|---|---|
| committer | sotech117 <michael_foiani@brown.edu> | 2024-05-02 19:29:49 -0400 |
| commit | c048f9f2219897ff3cc20a50d459911db3496a0a (patch) | |
| tree | 59dd4883ddc1dcb75c67703ba9af93dfe2ac7b8a | |
| parent | e650ed1e1e908e51c78c1b047bec0da7c4fea366 (diff) | |
major update, with final project rough draft code
5108 files changed, 1197 insertions, 323 deletions
| Binary files differ @@ -1,73 +1,73 @@ function dynamics!( - state, - prev_state, - params, - states + state, + prev_state, + params, + states, ) - # Unpack the parameters - N, modes, beta, A, dt, num_steps = params - - for i in 1:num_steps - next_state = zeros(N) - - # update the left particle (set to rest) - state[1] = 0 - - # update the right particle (set to rest) - state[N] = 0 - - # update the middle particles - for i in 2:N-1 - a = 2 * state[i] - prev_state[i] - b = dt * dt * (state[i + 1] - 2 * state[i] + state[i - 1]) - c = dt * dt * beta * ((state[i + 1] - state[i])^3 + (state[i - 1] - state[i])^3) - next_state[i] = a + b + c - end - - push!(states, next_state) - - # update the previous state - for i in 1:N - prev_state[i] = state[i] - end - # update the current state - for i in 1:N - state[i] = next_state[i] - end - end + # Unpack the parameters + N, modes, beta, A, dt, num_steps = params + + for i in 1:num_steps + next_state = zeros(N) + + # update the left particle (set to rest) + state[1] = 0 + + # update the right particle (set to rest) + state[N] = 0 + + # update the middle particles + for i in 2:N-1 + a = 2 * state[i] - prev_state[i] + b = dt * dt * (state[i+1] - 2 * state[i] + state[i-1]) + c = dt * dt * beta * ((state[i+1] - state[i])^3 + (state[i-1] - state[i])^3) + next_state[i] = a + b + c + end + + push!(states, next_state) + + # update the previous state + for i in 1:N + prev_state[i] = state[i] + end + # update the current state + for i in 1:N + state[i] = next_state[i] + end + end end function get_initial_state( - N, - modes, - beta, - A + N, + modes, + beta, + A, ) - state = zeros(N) - amp = A * sqrt(2 / (N - 1)) - for i in 2:N-1 - state[i] = amp * sin((modes * π * (i - 1)) / (N - 1)) - end - return state + state = zeros(N) + amp = A * sqrt(2 / (N - 1)) + for i in 2:N-1 + state[i] = amp * sin((modes * π * (i - 1)) / (N - 1)) + end + return state end function run_simulation( - N, - modes, - beta, - A, - dt, - num_steps + N, + modes, + beta, + A, + dt, + num_steps, ) - states = [] - state = get_initial_state(N, 1, beta, A) - prev_state = zeros(N) - for i in 1:N - prev_state[i] = state[i] - end - params = (N, modes, beta, A, dt, num_steps) - dynamics!(state, prev_state, params, states) - return states + states = [] + state = get_initial_state(N, 1, beta, A) + prev_state = zeros(N) + for i in 1:N + prev_state[i] = state[i] + end + params = (N, modes, beta, A, dt, num_steps) + dynamics!(state, prev_state, params, states) + return states end # Run the simulation @@ -76,7 +76,7 @@ beta = 1.5 # cubic string spring A = 10 # amplitude modes = 3 # number of modes to plot final_time = 50 # seconds -dt = .5 # seconds +dt = 0.5 # seconds num_steps = Int(final_time / dt) params = (N, modes, beta, A, dt, num_steps) s = run_simulation(N, modes, beta, A, dt, num_steps) @@ -89,7 +89,7 @@ using Plots # animate the s array of positions anim = @animate for i in 1:length(s) - plot(s[i], label="t = $(i * dt)", marker=:circle, xlabel="Mass Number", ylabel="Displacement", ylim=(-3, 3)) + plot(s[i], label = "t = $(i * dt)", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3)) end gif(anim, "plz.gif", fps = 30) diff --git a/hw7/8-12.jl b/hw7/8-12.jl index 29e18ec..b10d941 100644 --- a/hw7/8-12.jl +++ b/hw7/8-12.jl @@ -1,6 +1,6 @@ #!/Applications/Julia-1.7.app/Contents/Resources/julia/bin/julia -using Statistics +using Statistics using Plots function wrap_index(i::Int, l::Int)::Int @@ -9,95 +9,95 @@ function wrap_index(i::Int, l::Int)::Int end mutable struct Ising2D - l::Int - n::Int + l::Int + n::Int temperature::Float64 w::Vector{Float64} # Boltzmann weights - state::Matrix + state::Matrix energy::Float64 magnetization::Int - mc_steps::Int - accepted_moves::Int + mc_steps::Int + accepted_moves::Int energy_array::Vector{Float64} magnetization_array::Vector{Int} - H::Float64 -end + H::Float64 +end -Ising2D(l::Int, temperature::Float64, H=1.0) = begin - n = l^2 +Ising2D(l::Int, temperature::Float64, H = 1.0) = begin + n = l^2 w = zeros(9) w[9] = exp(-8.0 / temperature) w[5] = exp(-4.0 / temperature) state = ones(Int, l, l) # initially all spins up energy = Float64(-2 * n + 2 * H * n) magnetization = n - return Ising2D(l, n, temperature, w, state, energy, magnetization, 0, 0, - Int[], Int[], H) + return Ising2D(l, n, temperature, w, state, energy, magnetization, 0, 0, + Int[], Int[], H) end function reset!(ising::Ising2D) - ising.mc_steps = 0 - ising.accepted_moves = 0 - ising.energy_array = Int[] - ising.magnetization_array = Int[] + ising.mc_steps = 0 + ising.accepted_moves = 0 + ising.energy_array = Int[] + ising.magnetization_array = Int[] end -function mc_step!(ising::Ising2D) - l::Int = ising.l - n::Int = ising.n - w = ising.w +function mc_step!(ising::Ising2D) + l::Int = ising.l + n::Int = ising.n + w = ising.w - state = ising.state + state = ising.state accepted_moves = ising.accepted_moves - energy = ising.energy + energy = ising.energy magnetization = ising.magnetization random_positions = l * rand(2 * n) - random_array = rand(n) + random_array = rand(n) for k in 1:n - i = trunc(Int, random_positions[2 * k - 1]) + 1 - j = trunc(Int, random_positions[2 * k]) + 1 + i = trunc(Int, random_positions[2*k-1]) + 1 + j = trunc(Int, random_positions[2*k]) + 1 - changed_spins = state[i, j] * (state[i % l + 1, j] + - state[wrap_index(i - 1, l), j] + state[i, j % l + 1] + - state[i, wrap_index(j - 1, l)]) + changed_spins = state[i, j] * (state[i%l+1, j] + + state[wrap_index(i - 1, l), j] + state[i, j%l+1] + + state[i, wrap_index(j - 1, l)]) de = 2 * changed_spins + 2 * ising.H * state[i, j] if de <= 0 || rand() < exp(-de / ising.temperature) - accepted_moves += 1 - new_spin = - state[i, j] # flip spin + accepted_moves += 1 + new_spin = -state[i, j] # flip spin state[i, j] = new_spin - # add the effects of the new spin + # add the effects of the new spin energy += de magnetization += 2 * new_spin end end - ising.state = state + ising.state = state ising.accepted_moves = accepted_moves - ising.energy = energy - ising.magnetization = magnetization + ising.energy = energy + ising.magnetization = magnetization - append!(ising.energy_array, ising.energy) + append!(ising.energy_array, ising.energy) append!(ising.magnetization_array, ising.magnetization) ising.mc_steps = ising.mc_steps + 1 end -function steps!(ising::Ising2D, num::Int=100) +function steps!(ising::Ising2D, num::Int = 100) for i in 1:num mc_step!(ising) - end + end end function mean_energy(ising::Ising2D) return mean(ising.energy_array) / ising.n -end +end function specific_heat(ising::Ising2D) - return (std(ising.energy_array) / ising.temperature) ^ 2 / ising.n + return (std(ising.energy_array) / ising.temperature)^2 / ising.n end function mean_magnetization(ising::Ising2D) @@ -105,85 +105,93 @@ function mean_magnetization(ising::Ising2D) end function susceptibility(ising::Ising2D) - return (std(ising.magnetization_array)) ^ 2 / (ising.temperature * ising.n) + return (std(ising.magnetization_array))^2 / (ising.temperature * ising.n) end function observables(ising::Ising2D) - printstyled("Temperature\t\t", bold=true) - print(ising.temperature); print("\n") - - printstyled("Mean Energy\t\t", bold=true) - print(mean_energy(ising)); print("\n") - - printstyled("Mean Magnetiz.\t\t", bold=true) - print(mean_magnetization(ising)); print("\n") - - printstyled("Specific Heat\t\t", bold=true) - print(specific_heat(ising)); print("\n") - - printstyled("Susceptibility\t\t", bold=true) - print(susceptibility(ising)); print("\n") - - printstyled("MC Steps\t\t", bold=true) - print(ising.mc_steps); print("\n") - printstyled("Accepted Moves\t\t", bold=true) - print(ising.accepted_moves); print("\n") + printstyled("Temperature\t\t", bold = true) + print(ising.temperature) + print("\n") + + printstyled("Mean Energy\t\t", bold = true) + print(mean_energy(ising)) + print("\n") + + printstyled("Mean Magnetiz.\t\t", bold = true) + print(mean_magnetization(ising)) + print("\n") + + printstyled("Specific Heat\t\t", bold = true) + print(specific_heat(ising)) + print("\n") + + printstyled("Susceptibility\t\t", bold = true) + print(susceptibility(ising)) + print("\n") + + printstyled("MC Steps\t\t", bold = true) + print(ising.mc_steps) + print("\n") + printstyled("Accepted Moves\t\t", bold = true) + print(ising.accepted_moves) + print("\n") end function plot_ising(state::Matrix{Int}) pos = Tuple.(findall(>(0), state)) neg = Tuple.(findall(<(0), state)) - scatter(pos, markersize=5) - scatter!(neg, markersize=5) + scatter(pos, markersize = 5) + scatter!(neg, markersize = 5) end function find_m(H::Float64, l::Int, num::Int, T::Float64) - m = Ising2D(l, T, H) - steps!(m, num) - print("T = $T\n") - print("H = $H\n") - print("Mean Energy: $(mean_energy(m))\n") - print("Mean Magnetization: $(mean_magnetization(m))\n\n") - return mean_magnetization(m) + m = Ising2D(l, T, H) + steps!(m, num) + print("T = $T\n") + print("H = $H\n") + print("Mean Energy: $(mean_energy(m))\n") + print("Mean Magnetization: $(mean_magnetization(m))\n\n") + return mean_magnetization(m) end function map_h_to_m(H_range::Vector{Float64}, l::Int, num::Int, T::Float64) - m = [] - for H in H_range - push!(m, find_m(H, l, num, T)) - end - return m + m = [] + for H in H_range + push!(m, find_m(H, l, num, T)) + end + return m end function do_linear_regression(x::Vector{Float64}, y::Vector{Float64}) - n = length(x) - x̄ = mean(x) - ȳ = mean(y) - Σxy = sum((x .- x̄) .* (y .- ȳ)) - Σx² = sum((x .- x̄) .^ 2) - b = Σxy / Σx² - a = ȳ - b * x̄ - return a, b + n = length(x) + x̄ = mean(x) + ȳ = mean(y) + Σxy = sum((x .- x̄) .* (y .- ȳ)) + Σx² = sum((x .- x̄) .^ 2) + b = Σxy / Σx² + a = ȳ - b * x̄ + return a, b end -function plot_log_of_m_and_h(H_range::Vector{Float64}, l::Int, num::Int, T=2.27) - m = map_h_to_m(H_range, l, num, T) - p = scatter(H_range, m, label="M vs H", xlabel="H", ylabel="M", title="Magnetization (M) vs Field (B) for Ising Model at T_c", scale=:ln) +function plot_log_of_m_and_h(H_range::Vector{Float64}, l::Int, num::Int, T = 2.27) + m = map_h_to_m(H_range, l, num, T) + p = scatter(H_range, m, label = "M vs H", xlabel = "H", ylabel = "M", title = "Magnetization (M) vs Field (B) for Ising Model at T_c", scale = :ln) - # get the linear regression of the log + # get the linear regression of the log log_h = log.(H_range) log_m = log.(m) a, b = do_linear_regression(log_h, log_m) println("a: $a, b: $b") # plot the linear regression - plot!(p, H_range, exp.(a) .* H_range .^ b, label="linear regression = $(round(a, digits=3)) + $(round(b, digits=3))x", line=:dash, color=:red) + plot!(p, H_range, exp.(a) .* H_range .^ b, label = "linear regression = $(round(a, digits=3)) + $(round(b, digits=3))x", line = :dash, color = :red) - return p + savefig(p, "hw7/magnetization_vs_field.png") + return p end # textbook rec -h_range = .02:.02:.2 +h_range = 0.02:0.02:0.2 h_range = collect(h_range) T = 2.27 # T_c for this system side = 64 diff --git a/hw7/magnetization_vs_field.png b/hw7/magnetization_vs_field.png Binary files differnew file mode 100644 index 0000000..0ef28b5 --- /dev/null +++ b/hw7/magnetization_vs_field.png diff --git a/t/.DS_Store b/t/.DS_Store Binary files differnew file mode 100644 index 0000000..446c2ed --- /dev/null +++ b/t/.DS_Store diff --git a/t/animate-positions.mp4 b/t/animate-positions.mp4 Binary files differdeleted file mode 100644 index 3633358..0000000 --- a/t/animate-positions.mp4 +++ /dev/null diff --git a/t/animated-fpu.mp4 b/t/animated-fpu.mp4 Binary files differnew file mode 100644 index 0000000..87c2082 --- /dev/null +++ b/t/animated-fpu.mp4 diff --git a/t/breakdown-time-over-beta-od.png b/t/breakdown-time-over-beta-od.png Binary files differnew file mode 100644 index 0000000..c117be8 --- /dev/null +++ b/t/breakdown-time-over-beta-od.png diff --git a/t/breakdown-time-over-beta-short.png b/t/breakdown-time-over-beta-short.png Binary files differnew file mode 100644 index 0000000..7e8935e --- /dev/null +++ b/t/breakdown-time-over-beta-short.png diff --git a/t/breakdown-time-over-beta.png b/t/breakdown-time-over-beta.png Binary files differnew file mode 100644 index 0000000..efe8473 --- /dev/null +++ b/t/breakdown-time-over-beta.png diff --git a/t/disp.jl b/t/disp.jl deleted file mode 100644 index 41ee2bb..0000000 --- a/t/disp.jl +++ /dev/null @@ -1,173 +0,0 @@ -function calculate_force( - left_pos, - middle_pos, - right_pos, - K, - alpha = 0, - beta = 0, -) - linear_force = K * (middle_pos - left_pos + middle_pos - right_pos) - quadratic_force = alpha * (middle_pos - left_pos)^2 + alpha * (middle_pos - right_pos)^2 - cubic_force = beta * (middle_pos - left_pos)^3 + beta * (middle_pos - right_pos)^3 - return linear_force + quadratic_force + cubic_force -end - -function tendency!(du, u, p, t) - # unpack the params - N, K, m = p - - # get the positions and momenta - qs = u[1:2:end] - ps = u[2:2:end] - - # go over the points in the lattice and update the state - for i in 2:N-1 - mass = m - if i == 2 * Int(N / 2) - 1 || i == 2 * Int(N / 2) - mass = 10000 - end - - du[i*2-1] = ps[i] / mass - force = - du[i*2] = force / mass - end - - force_end = K * (qs[2] - 2 * qs[1] + qs[N-1]) - du[1] = ps[1] / m - du[2] = force_end / m - du[end-1] = ps[end] / m - du[end] = force_end / m -end - -function get_initial_state( - N, - initial_displacement = 2, - initial_velocity = 0, -) - state = zeros(2 * N) - - middle_index = 2 * Int(N / 2) - 1 # middle mass - state[middle_index] = initial_displacement - state[middle_index+1] = initial_velocity - return state -end - -using DifferentialEquations -function run_simulation( - N, - K, - m, - final_time, - initial_displacement = 2, - initial_velocity = 0, -) - println("Running simulation with N = $N, K = $K, m = $m, final_time = $final_time, initial_displacement = $initial_displacement, initial_velocity = $initial_velocity\n") - s_0 = get_initial_state(N, initial_displacement, initial_velocity) - - # pack the params - p = N, K, m - t_span = (0.0, final_time) - prob = ODEProblem(tendency!, s_0, t_span, p) - sol = solve(prob, Tsit5(), reltol = 1e-10, abstol = 1e-10) # control simulation - - println("Done Running Sim!\n\n") - return sol -end - -using Plots -function animate_positions( - states, - time_steps, - time_min = 0, - time_max = 30, - red_threshold = 2, -) - println("Animating positions") - anim = @animate for i in 1:length(time_steps) - t = time_steps[i] - if t < time_min - continue - end - if t > time_max - break - end - positions = states[i][1:2:end] - v_middle = states[i][Int(length(states[1]) / 2)] - # plot(positions, label = "t = $(round(t, digits = 3)), v_middle=$(round(v_middle, digits=3))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3)) - if v_middle >= red_threshold - plot(positions, label = "t = $(round(t, digits = 3)), v_middle=$(round(v_middle, digits=3))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3), - color = :red, legend = :topright, - ) - else - plot(positions, label = "t = $(round(t, digits = 3)), v_middle=$(round(v_middle, digits=3))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3), - color = :blue, legend = :topright, - ) - end - end - mp4(anim, "t/animate-positions.mp4", fps = 30) - println("Done animating positions") -end - -function plot_starting_and_final_positions( - states, - time_steps, -) - p1 = plot(states[1][1:2:end], label = "Initial", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", title = "First Three Modes") - plot!(p1, states[end][1:2:end], label = "Final", marker = :circle) - - # plot the vels - p2 = plot(states[1][2:2:end], label = "Initial", marker = :circle, xlabel = "Mass Number", ylabel = "Velocity", title = "First Three Modes") - plot!(p2, states[end][2:2:end], label = "Final", marker = :circle) - - # save the plots - savefig(p1, "t/initial-final-positions.png") - savefig(p2, "t/initial-final-velocities.png") -end - -function analyize_vels( - states, - time_steps, - threshold = 1.975, -) - println("Analyzing velocities:\n") - output = [] - for i in 1:length(states) - if states[i][Int(length(states[i]) / 2)] >= threshold - push!(output, i) - println("Time: ", time_steps[i], " Position: ", states[i][Int(length(states[i]) / 2)]) - end - end - - # plot the first 10 seconds of Velocity - data = [] - for i in 1:length(states) - if time_steps[i] > 10 - break - end - push!(data, states[i][Int(length(states[i]) / 2)]) - end - p = plot(data, label = "Velocity Over Time", xlabel = "Time", ylabel = "Velocity") - savefig(p, "t/velocity-over-time.png") - - println("\nDone!\n\n") - return output -end - -# Run the simulation -N = 10 # number of masses -beta = 0 # cubic string spring -K = 100 # spring constant -A = 10 # amplitude -final_time = 10000 # seconds -m = 1 # mass of particles -plot_data = [] - -my_vel = 10 - -sol = run_simulation(N, K, m, final_time, 0, my_vel) - -println("final time: ", sol.t[end]) -# s = sol.u[1:2:end] -analyize_vels(sol.u, sol.t, my_vel) -plot_starting_and_final_positions(sol.u, sol.t) -animate_positions(sol.u, sol.t, 0, 1, my_vel) diff --git a/t/energies-modes-separate-beta-0.0.png b/t/energies-modes-separate-beta-0.0.png Binary files differnew file mode 100644 index 0000000..4c8d59e --- /dev/null +++ b/t/energies-modes-separate-beta-0.0.png diff --git a/t/energies-modes-separate-beta-0.05.png b/t/energies-modes-separate-beta-0.05.png Binary files differnew file mode 100644 index 0000000..9c95b81 --- /dev/null +++ b/t/energies-modes-separate-beta-0.05.png diff --git a/t/energies-modes-separate-beta-0.06.png b/t/energies-modes-separate-beta-0.06.png Binary files differnew file mode 100644 index 0000000..91e6264 --- /dev/null +++ b/t/energies-modes-separate-beta-0.06.png diff --git a/t/energies-modes-separate-beta-0.07.png b/t/energies-modes-separate-beta-0.07.png Binary files differnew file mode 100644 index 0000000..af66859 --- /dev/null +++ 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+++ b/t/old/disp.jl @@ -0,0 +1,272 @@ +M = 10 +m = 1 # mass of particles + +function calculate_force( + left_pos, + middle_pos, + right_pos, + K, + alpha = 0.0, + beta = 1000.0, +) + linear_force = K * (left_pos + right_pos - 2 * middle_pos) + quadratic_force = alpha * (left_pos - middle_pos)^2 + alpha * (right_pos - middle_pos)^2 + cubic_force = beta * (left_pos - middle_pos)^3 + beta * (right_pos - middle_pos)^3 + + return linear_force + quadratic_force + cubic_force +end + +function tendency!(du, u, p, t) + # unpack the params + N, K, m = p + + # get the positions and momenta + qs = u[1:2:end] + ps = u[2:2:end] + + # go over the points in the lattice and update the state + for i in 1:N-1 + mass = m + if i == Int(N / 2) + mass = M + end + + left_index = max(1, i - 1) + right_index = min(N, i + 1) + + du[i*2-1] = ps[i] / mass + force = calculate_force(qs[left_index], qs[i], qs[right_index], K) + du[i*2] = force / mass + end + + # make last point same as first + du[N*2-1] = du[1] = 0 # set to 0 + du[N*2] = du[2] = 0 + + + if t % 100000 == 0 + println("TIME UPDATE: ", t) + end + + # if ps[Int(N / 2)] / M >= 1 + # println("(in sim!) Time: ", t, " Vel: ", ps[Int(N / 2)] / M) + # # println("Other Positions: ", qs) + # println("Other Velocities: ", ps, "\n") + # end +end + +function get_initial_state( + N, + initial_displacement = 2, + initial_velocity = 0, +) + state = zeros(2 * N) + + middle_index = 2 * Int(N / 2) - 1 # middle mass + state[middle_index] = initial_displacement + state[middle_index+1] = initial_velocity * M + return state +end + +using DifferentialEquations +function run_simulation( + N, + K, + m, + final_time, + initial_displacement = 2, + initial_velocity = 0, +) + println("Running simulation with N = $N, K = $K, m = $m, final_time = $final_time, initial_displacement = $initial_displacement, initial_velocity = $initial_velocity\n") + s_0 = get_initial_state(N, initial_displacement, initial_velocity) + + calculate_energy(s_0) + + # pack the params + p = N, K, m + t_span = (0.0, final_time) + prob = ODEProblem(tendency!, s_0, t_span, p) + sol = solve(prob, Tsit5(), reltol = 1e-5, abstol = 1e-5, maxiters = 1e10) # control simulation + + calculate_energy(sol.u[end]) + + println("Done Running Sim!\n\n") + return sol +end + +using Plots +function animate_positions( + states, + time_steps, + time_min = 0, + time_max = 30, + red_threshold = 2, + shift = true, +) + println("Animating positions") + anim = @animate for i in 1:length(time_steps) + t = time_steps[i] + if t < time_min + continue + end + if t > time_max + break + end + positions = states[i][1:2:end] + v_middle = states[i][Int(length(states[1]) / 2)] / M + p_middle = states[i][Int(length(states[1]) / 2)-1] + y_lims = shift ? (-3 + p_middle, 3 + p_middle) : (-3, 3) + # plot(positions, label = "t = $(round(t, digits = 3)), v_middle=$(round(v_middle, digits=3))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3)) + if v_middle >= red_threshold + plot(positions, label = "t = $(round(t, digits = 7)), v_middle=$(round(v_middle, digits=7))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = y_lims, + color = :red, legend = :topright, + ) + else + plot(positions, label = "t = $(round(t, digits = 7)), v_middle=$(round(v_middle, digits=7))", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = y_lims, + color = :blue, legend = :topright, + ) + end + end + mp4(anim, "t/animate-positions.mp4", fps = 30) + println("Done animating positions") +end + +function plot_starting_and_final_positions( + states, + time_steps, +) + # plot the positions + middle_index = Int(length(states[1]) / 2) - 1 + pos_init = [x - states[1][middle_index] for x in states[1][1:2:end]] + pos_final = [x - states[end][middle_index] for x in states[end][1:2:end]] + p1 = plot(pos_init, label = "Initial", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", title = "Positions Over Time") + plot!(p1, pos_final, label = "Final", marker = :circle) + + # plot the vels + vels_init = [x / M for x in states[1][2:2:end]] + vels_final = [x / M for x in states[end][2:2:end]] + p2 = plot(states[1][2:2:end], label = "Initial", marker = :circle, xlabel = "Mass Number", ylabel = "Velocity", title = "Velocities Over Time") + plot!(p2, states[end][2:2:end], label = "Final t = $(time_steps[end])", marker = :circle) + + # save the plots + savefig(p1, "t/initial-final-positions.png") + savefig(p2, "t/initial-final-velocities.png") +end + +function analyize_vels( + states, + time_steps, + threshold = 1.975, +) + println("Analyzing velocities:\n") + output = [] + for i in 1:length(states) + v = states[i][Int(length(states[i]) / 2)] / M + if v >= threshold - 10e-6 + push!(output, i) + println("Time: ", time_steps[i], " Vel: ", v) + end + end + + data = [] + for i in 1:length(states) + push!(data, states[i][Int(length(states[i]) / 2)]) + end + p = plot(data, label = "Velocity Over Time", xlabel = "Time", ylabel = "Velocity") + savefig(p, "t/velocity-over-time.png") + + println("\nDone!\n\n") + return output +end + +function analyize_pos( + states, + time_steps, + threshold = 1.975, +) + println("Analyzing positions:\n") + output = [] + for i in 1:length(states) + if states[i][Int(length(states[i]) / 2)-1] >= threshold + push!(output, i) + println("Time: ", time_steps[i], " Position: ", states[i][Int(length(states[i]) / 2)]) + end + end + + # plot the first 10 seconds of Velocity + data = [] + for i in 1:length(states) + if time_steps[i] > 10 + break + end + push!(data, states[i][Int(length(states[i]) / 2)] - 1) + end + p = plot(data, label = "Position Over Time", xlabel = "Time", ylabel = "Position") + savefig(p, "t/pos-over-time.png") + + println("\nDone!\n\n") + return output +end + +function calculate_energy(state) + # calculate the kinetic energy + kinetic_energy = 0 + vels = state[2:2:end] + for i in 1:N + mass = i == Int(N / 2) - 1 ? M : m + # calculate the kinetic energy + kinetic_energy += 0.5 * vels[i] * vels[i] / mass + end + + # calcaute the potential energy + potential_energy = 0 + pos = state[1:2:end] + for i in 1:N-1 + left_index = max(1, i - 1) + right_index = min(N, i + 1) + potential_energy += 0.5 * K * (pos[left_index] - pos[i])^2 + potential_energy += 0.5 * K * (pos[right_index] - pos[i])^2 + end + + # print the energy + println("Kinetic Energy: ", kinetic_energy) + println("Potential Energy: ", potential_energy) + println("Total Energy: ", kinetic_energy + potential_energy, "\n") +end + +function plot_middle_mass_phase_space(states) + # get the index of the middle mass + middle_index = Int(length(states[1]) / 2) - 1 + # build an array of the pos and vel over time + pos = [] + vel = [] + for i in 1:length(states) + push!(pos, states[i][middle_index]) + push!(vel, states[i][middle_index+1]) + end + + # plot the phase space + p = plot(pos, vel, xlabel = "Position", ylabel = "Momentum", title = "Phase Space of Middle Mass in FPU", label = "Beta = 10, K = 1, N = 64, M = $M") + + # save the plot + savefig(p, "t/phase-space.png") +end + + +# Run the simulation +N = 64 # number of masses +K = 1 # spring constant +final_time = 1000 # seconds +plot_data = [] + +my_vel = 100 + +sol = run_simulation(N, K, m, final_time, 0, my_vel) + +println("final time: ", sol.t[end]) +# s = sol.u[1:2:end] +# analyize_vels(sol.u, sol.t, my_vel) +# analyize_pos(sol.u, sol.t, 1.4) +plot_starting_and_final_positions(sol.u, sol.t) +# animate_positions(sol.u, sol.t, 0, 100, my_vel) # expect 80913.35854226245 for k=10?? rip +plot_middle_mass_phase_space(sol.u) diff --git a/t/old/initial-final-positions.png b/t/old/initial-final-positions.png Binary files differnew file mode 100644 index 0000000..e76793d --- /dev/null +++ b/t/old/initial-final-positions.png diff --git a/t/old/initial-final-velocities.png b/t/old/initial-final-velocities.png Binary files differnew file mode 100644 index 0000000..b7cc859 --- /dev/null +++ b/t/old/initial-final-velocities.png diff --git a/t/old/modes-beta15.png b/t/old/modes-beta15.png Binary files differnew file mode 100644 index 0000000..dbb632d --- /dev/null +++ b/t/old/modes-beta15.png diff --git a/t/old/phase-space-.5vel.png b/t/old/phase-space-.5vel.png Binary files differnew file mode 100644 index 0000000..100cd2e --- /dev/null +++ b/t/old/phase-space-.5vel.png diff --git a/t/old/phase-space-chos.png b/t/old/phase-space-chos.png Binary files differnew file mode 100644 index 0000000..cbbbf09 --- /dev/null +++ b/t/old/phase-space-chos.png diff --git a/t/old/phase-space-stable.png b/t/old/phase-space-stable.png Binary files differnew file mode 100644 index 0000000..2ffa7c6 --- /dev/null +++ b/t/old/phase-space-stable.png diff --git a/t/old/phase-space.01strings.png b/t/old/phase-space.01strings.png Binary files differnew file mode 100644 index 0000000..5e78901 --- /dev/null +++ b/t/old/phase-space.01strings.png diff --git a/t/old/phase-space.png b/t/old/phase-space.png Binary files differnew file mode 100644 index 0000000..48e5368 --- /dev/null +++ b/t/old/phase-space.png diff --git a/t/plot_data.png b/t/old/plot_data.png Binary files differindex d052983..d052983 100644 --- a/t/plot_data.png +++ b/t/old/plot_data.png diff --git a/t/old/plz.gif b/t/old/plz.gif Binary files differnew file mode 100644 index 0000000..febf678 --- /dev/null +++ b/t/old/plz.gif diff --git a/t/old/plz.mp4 b/t/old/plz.mp4 Binary files differnew file mode 100644 index 0000000..6a0d7b4 --- /dev/null +++ b/t/old/plz.mp4 diff --git a/t/old/pos-over-time.png b/t/old/pos-over-time.png Binary files differnew file mode 100644 index 0000000..e3a732d --- /dev/null +++ b/t/old/pos-over-time.png diff --git a/t/old/semi-old b/t/old/semi-old new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/t/old/semi-old diff --git a/t/old/velocity-over-time.png b/t/old/velocity-over-time.png Binary files differnew file mode 100644 index 0000000..3cab01f --- /dev/null +++ b/t/old/velocity-over-time.png diff --git a/t/plz.jl b/t/plz.jl new file mode 100644 index 0000000..962398a --- /dev/null +++ b/t/plz.jl @@ -0,0 +1,767 @@ +function calculate_force( + left_pos, + middle_pos, + right_pos, + K, + alpha = 0.0, + beta = 0.0, +) + linear_force = K * (left_pos + right_pos - 2 * middle_pos) + quadratic_force = alpha * (left_pos - middle_pos)^2 + alpha * (right_pos - middle_pos)^2 + cubic_force = beta * (left_pos - middle_pos)^3 + beta * (right_pos - middle_pos)^3 + + return linear_force + quadratic_force + cubic_force +end + +function tendency!(du, u, params, t) + # unpack the params + N, modes, beta, A, dt, num_steps = params + + # get the positions and momenta + qs = u[1:2:end] + ps = u[2:2:end] + + num_masses = length(qs) + + # go over the points in the lattice and update the state + for i in 2:num_masses-1 + # left_index = max(1, i - 1) + # right_index = min(N, i + 1) + + du[i*2-1] = ps[i] + force = calculate_force(qs[i-1], qs[i], qs[i+1], 1, 0, beta) + du[i*2] = force + end + + # make last point same as first at rest + du[num_masses*2-1] = du[1] = 0 # set to 0 + du[num_masses*2] = du[2] = 0 + + # if ps[Int(N / 2)] / M >= 1 + # println("(in sim!) Time: ", t, " Vel: ", ps[Int(N / 2)] / M) + # # println("Other Positions: ", qs) + # println("Other Velocities: ", ps, "\n") + # end +end + +function get_initial_state( + N, + modes, + beta, + A, +) + state = zeros(N + 2) + amp = A * sqrt(2 / (N + 1)) + for i in 2:N+1 + state[i] = amp * sin((modes * π * (i - 1)) / (N + 1)) + end + return state +end + +using DifferentialEquations +function run_simulation( + N, + modes, + beta, + A, + dt, + num_steps, +) + println("Running simulation with params: N=$N, modes=$modes, beta=$beta, A=$A, dt=$dt, num_steps=$num_steps") + # states = [] + state = get_initial_state(N, 1, beta, A) + # prev_state = zeros(N) + # for i in 1:N + # prev_state[i] = state[i] + # end + params = (N, modes, beta, A, dt, num_steps) + # dynamics!(state, prev_state, params, states) + + # state above is position, need to add in momentum + s_0 = zeros(2 * (N + 2)) + for i in 1:length(state) + s_0[i*2-1] = state[i] + end + final_time = num_steps * dt + t_span = (0.0, final_time) + prob = ODEProblem(tendency!, s_0, t_span, params) + sol = solve(prob, Tsit5(), reltol = 1e-8, abstol = 1e-8, maxiters = 1e10) # control simulation + + return sol +end + +function get_pos_from_state(state) + return state[1:2:end] +end + +# Run the simulation +# N = 32 # number of masses +# beta = 2.3 # cubic string spring +# A = 10 # amplitude +# modes = 3 # number of modes to plot +# final_time = 100000 # seconds +# dt = 0.05 # seconds +# num_steps = Int(final_time / dt) +# params = (N, modes, beta, A, dt, num_steps) +# println("Running simulation with params: ", params) +# sol = run_simulation(N, modes, beta, A, dt, num_steps) +# states = sol.u +# timesteps = sol.t +# println("Final state: ", states[end]) + +# plot the inital positions and the final positions +using Plots +# init_pos = get_initial_state(N, 1, beta, A) +# final_pos = get_pos_from_state(states[end]) +# println("Initial: ", init_pos) +# println("Final: ", final_pos) +# plot(init_pos, label = "Initial", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", title = "First Three Modes") +# plot!(final_pos, label = "Final", marker = :circle) +# println("Saving initial-final-beta15.png") +# savefig("t/initial-final-beta-$beta.png") + +function animate_states(states, timesteps, from = 1, to = 1000) + println("\nAnimating states") + # animate the s array of positions + # find the timestep that maps to the state index + i_start = 1 + i_end = length(timesteps) + for i in 1:length(timesteps) + if timesteps[i] <= from + i_start = i + continue + end + if timesteps[i] >= to + i_end = i + break + end + end + + anim = @animate for i in i_start:i_end + s = get_pos_from_state(states[i]) + t = timesteps[i] + plot(s, label = "t = $t", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", ylim = (-3, 3)) + end + + mp4(anim, "t/animated-fpu.mp4", fps = 30) + println("Done animating, wrote to animated-fpu.mp4\n") +end +# animate_states(states, timesteps, 149500, 150000) + +function caluclate_energies_for_mode(states, mode) + N = length(states[1]) / 2 - 2 + + total = [] + kinetic = [] + potential = [] + + for i in 1:length(states) + total_energy = 0 + kinetic_energy = 0 + potential_energy = 0 + + # find a_k for this mode + poses = get_pos_from_state(states[i]) + a_k = 0 + for j in 1:length(poses) + a_k += poses[j] * sin((mode * (j - 1) * π) / (N + 1)) + end + amp = sqrt(2 / (N + 1)) + a_k *= amp + + # get the potenital energy + omega_k = 2 * sin((mode * π) / (2 * (N + 1))) + p = 0.5 * omega_k^2 * a_k^2 + + # find the kinetic energy + v_k = 0 + vels = states[i][2:2:end] + for j in 1:length(vels) + v_k += vels[j] * sin((mode * (j - 1) * π) / (N + 1)) + end + v_k *= amp + k = 0.5 * v_k^2 + + + total_energy += k + p + kinetic_energy += k + potential_energy += p + push!(total, total_energy) + push!(kinetic, kinetic_energy) + push!(potential, potential_energy) + end + return total, kinetic, potential +end + +function calculate_total_energy_by_state(states, timesteps) + total = [] + kinetic = [] + potential = [] + for i in 1:length(states) + vels = states[i][2:2:end] + k = 0.5 * sum(vels .^ 2) + + poses = get_pos_from_state(states[i]) + p = 0 + for j in 2:length(poses) + p += beta * (poses[j] - poses[j-1])^2 + end + + push!(total, k + p) + push!(kinetic, k) + push!(potential, p) + end + + # plot all three over time on the same plot + plot(timesteps, total, label = "Total Energy", xlabel = "Time", ylabel = "Energy", title = "Total Energy Over Time") + plot!(timesteps, kinetic, label = "Kinetic Energy") + plot!(timesteps, potential, label = "Potential Energy") + + return total, kinetic, potential +end + +function print_energies_for_modes(states, max_mode = 3, index = 1) + # get the sum of total energy over all mode + total = 0 + kinetic = 0 + potential = 0 + for i in 1:max_mode + t, k, p = caluclate_energies_for_mode(states, i) + total += t[index] + kinetic += k[index] + potential += p[index] + end + println("Total Energy: ", total) + println("Kinetic Energy: ", kinetic) + println("Potential Energy: ", potential) +end + +function plot_phase_space(states, mass_number, intersecting_mass = 4) + # get the positions and momenta + qs = [] + ps = [] + + for i in 2:length(states) + # only store if the other mass is crossing 0 + if (states[i-1][intersecting_mass*2-1] < 0 && states[i][intersecting_mass*2-1] > 0) || (states[i-1][intersecting_mass*2-1] > 0 && states[i][intersecting_mass*2-1] < 0) + s = states[i] + q = s[mass_number*2-1] + p = s[mass_number*2] + push!(qs, q) + push!(ps, p) + end + end + + s = scatter( + qs, + ps, + label = "Mass $mass_number", + xlabel = "Displacement", + ylabel = "Momentum", + title = "Phase Space for Masses when Mass $intersecting_mass crosses 0", + legend = :topleft, + marker = :circle, + markersize = 2, + xlim = (-1.5, 1.5), + ylim = (-1.5, 1.5), + ) + + # savefig(s, "t/phase-space-mass$mass_number-beta15.png") + + return s +end + +function analyze_energies_of_n_modes(modes::Array{Int}, states, timesteps, beta) + println("Analyzing energies of modes: ", modes) + + total_by_mode = Dict() + kinetic_by_mode = Dict() + potential_by_mode = Dict() + for j in modes + t, k, p = caluclate_energies_for_mode(states, j) + + total_by_mode[j] = t + kinetic_by_mode[j] = k + potential_by_mode[j] = p + end + + total_energy = [] + kinetic_energy = [] + potential_energy = [] + for i in 1:length(states) + total = 0 + kinetic = 0 + potential = 0 + + for j in modes + total += total_by_mode[j][i] + kinetic += kinetic_by_mode[j][i] + potential += potential_by_mode[j][i] + end + + push!(total_energy, total) + push!(kinetic_energy, kinetic) + push!(potential_energy, potential) + end + + # plot all three over time on the same plot + plot(timesteps, total_energy, label = "Total Energy", xlabel = "Time", ylabel = "Energy", title = "Total Energy Over Time") + plot!(timesteps, kinetic_energy, label = "Kinetic Energy") + plot!(timesteps, potential_energy, label = "Potential Energy") + savefig("t/procs/energies-modes-sum-beta-$beta.png") + println("Saved energies-modes-sum-beta-$beta.png. Summary Below:\n") + + # plot the energies for each mode over time + plt = plot(title = "Energy Over Time for Modes $(join(modes, ", "))", xlabel = "Time", ylabel = "Energy") + for mode in modes + plot!(plt, timesteps, total_by_mode[mode], label = "Mode $mode") + # plot!(plt, timesteps, kinetic_by_mode[mode], label = "Mode $mode Kinetic") + # plot!(plt, timesteps, potential_by_mode[mode], label = "Mode $mode Potential") + end + savefig(plt, "t/procs/energies-modes-separate-beta-$beta.png") + + # print the energies + println("Total Energy Initial: ", total_energy[1]) + println("Total Energy Final: ", total_energy[end]) + println("Kinetic Energy Initial: ", kinetic_energy[1]) + println("Kinetic Energy Final: ", kinetic_energy[end]) + println("Potential Energy Initial: ", potential_energy[1]) + println("Potential Energy Final: ", potential_energy[end], "\n") + + println("Done analyzing energies of modes: ", modes, "\n") + + return total_energy, kinetic_energy, potential_energy, total_by_mode, kinetic_by_mode, potential_by_mode +end + +function animate_masses_phase_space(states, mass_numbers, intersecting_mass = 4) + println("\nAnimating phase space for mass $mass_numbers when mass $intersecting_mass crosses 0") + # animate the s array of positions + # find the timestep that maps to the state index + anim = @animate for i in mass_numbers + s = plot_phase_space(states, i, intersecting_mass) + s + end + + mp4(anim, "t/animated-phase-space-masses-beta-$beta.mp4", fps = 24) +end + +function plot_mode_phase_space(states, mode_num, intersecting_mode, beta) + println("\nPlotting phase space for mode $mode_num") + + # convert the state to a mode + a_modes = [] + vel_modes = [] + a_inter_modes = [] + vel_inter_modes = [] + + N = length(states[1]) / 2 - 2 + + for i in 1:length(states) + a_mode = 0 + vel_mode = 0 + a_inter_mode = 0 + vel_inter_mode = 0 + + positions = states[i][1:2:end] + velocities = states[i][2:2:end] + for j in 2:length(positions)-1 + a_mode += positions[j] * sin((mode_num * (j - 1) * π) / (N + 1)) + vel_mode += velocities[j] * sin((mode_num * (j - 1) * π) / (N + 1)) + a_inter_mode += positions[j] * sin((intersecting_mode * (j - 1) * π) / (N + 1)) + vel_inter_mode += velocities[j] * sin((intersecting_mode * (j - 1) * π) / (N + 1)) + end + + amp = sqrt(2 / (N + 1)) + a_mode *= amp + vel_mode *= amp + a_inter_mode *= amp + vel_inter_mode *= amp + + if i == 1 + push!(a_inter_modes, a_inter_mode) + push!(vel_inter_modes, vel_inter_mode) + continue + end + + if ((a_inter_modes[end] < 0 && a_inter_mode > 0) || (a_inter_modes[end] > 0 && a_inter_mode < 0)) + push!(a_modes, a_mode) + push!(vel_modes, vel_mode) + end + push!(a_inter_modes, a_inter_mode) + push!(vel_inter_modes, vel_inter_mode) + end + + + # plot the phase space + scatter(a_modes, vel_modes, label = "Beta = $beta", xlabel = "Displacement", ylabel = "Momentum", + title = "Phase Space for Mode $mode_num when a_$intersecting_mode crosses 0", + xlim = (-10, 10), + ylim = (-1, 1), + color = :red, + legend = :topright, + ) + # savefig("t/frames/phase-space-mode-$mode_num-beta-$beta.png") + println("Saved phase-space-mode-$mode_num-beta-$beta.png") +end + +function animate_phase_space_plots_over_beta(betas, t_max, desired_mode, intersecting_mode) + N = 32 # number of masses + A = 10 # amplitude + modes = 3 # number of modes to plot + final_time = t_max # seconds + dt = 0.05 # seconds + num_steps = Int(final_time / dt) + + results = [] + for b in betas + s = run_simulation(N, modes, b, A, dt, num_steps) + states = s.u + timesteps = s.t + + push!(results, states) + + println("Simualted beta: ", b, " to t=", timesteps[end]) + end + + anim = @animate for i in 1:length(betas) + plot_mode_phase_space(results[i], desired_mode, intersecting_mode, betas[i]) + end + + mp4(anim, "t/animated-phase-space-modes-over-beta.mp4", fps = 15) +end + +# animate_phase_space_plots_over_beta(collect(0:0.025:4), 25000, 1, 3) + +# analyze_energies_of_n_modes([1, 3, 5, 7, 9, 11], timesteps) + +# animate_masses_phase_space(states, collect(2:N+1), 17) + +# plot_mode_phase_space(states, 1, 3) + +function estimate_lynapov_exponent(t_max, beta, jitter = 0.001) + println("Estimating Lynapov Exponent for beta: ", beta) + + N = 32 # number of masses + A = 10 # amplitude + modes = 3 # number of modes to plot + println("t_msx: ", t_max) + final_time = t_max # seconds + dt = 0.05 # seconds + num_steps = Int(final_time / dt) + + t_span = (0.0, final_time) + params = (N, modes, beta, A, dt, num_steps) + + # run a simulation with normal parameters + is = get_initial_state(N, 1, beta, A) + # plot iniital state + plot(is, label = "Initial State", marker = :circle, xlabel = "Mass Number", ylabel = "Displacement", title = "Initial Positions of Masses", markersize = 4) + is_0 = zeros(2 * (N + 2)) + for i in 1:length(is) + is_0[i*2-1] = is[i] + end + prob_s = ODEProblem(tendency!, is_0, t_span, params) + # solve so that the timestep is exactly set to dt + s = solve(prob_s, SSPRK33(), dt = dt) + states_control = s.u + timesteps = s.t + + + # run a simulation with a small perturbation + # dynamics!(state, prev_state, params, states) + # state above is position, need to add in momentum + is2 = get_initial_state(N, 1, beta, A) .* (1 - jitter) # perturb the initial state + # is2 = get_initial_state(N, 1, beta, A) .- jitter # perturb the initial state + plot!(is2, label = "Perturbed Initial State", marker = :cross, xlabel = "Mass Number", ylabel = "Displacement", title = "Perturbed Initial Positions of Masses", msw = 2) + savefig("t/new/inits-jitter.png") + s_0 = zeros(2 * (N + 2)) + for i in 1:length(is2) + s_0[i*2-1] = is2[i] + end + + # add random jitter to the initial state + # middle_index = Int(N / 2) * 2 + # s_0[middle_index] -= jitter # subtract a little from momenetum of middle particle + + final_time = num_steps * dt + t_span = (0.0, final_time) + prob = ODEProblem(tendency!, s_0, t_span, params) + sol = solve(prob, SSPRK33(), dt = dt) # perturbed simulation + state_perturbed = sol.u + time_perturbed = sol.t + + # println(time_perturbed .- timesteps, "\n") + + println("Finished simulations") + println("Control len: ", length(states_control), " Perturbed len: ", length(state_perturbed), " Time len: ", length(time_perturbed)) + + + # # print the difference in the two initial states + # println("Initial State Difference (pertrubed - control): ", state_perturbed[1] .- states_control[1]) + # println("Final State Difference (pertrubed - control): ", state_perturbed[end] .- states_control[end]) + + # plot the difference in the two states over time + differences = [] + for i in 1:length(state_perturbed) + # calculate mode 1 difference + a_k = 0 + amp = sqrt(2 / (N + 1)) + for j in 1:N + diff = abs(state_perturbed[i][j*2-1] - states_control[i][j*2-1]) + a_k += diff * sin((1 * (j - 1) * π) / (N + 1)) + end + a_k *= amp + push!(differences, a_k) + end + plot(time_perturbed, differences, label = "Difference in States", xlabel = "Time", ylabel = "Difference", title = "Absolute Difference in States Over Time", lw = 1.5, color = :blue) + savefig("t/frames/difference-in-states-beta-$beta.png") + # perform a linear regression on the log of the differences + # cut the data set into everythign after t=500 + # find the index where t = 500 + # index = 1 + # for i in 1:length(time_perturbed) + # if time_perturbed[i] >= 500 + # index = i + # break + # end + # end + # differences = differences[index:end] + # time_perturbed = time_perturbed[index:end] + ln_differeces = log.(differences) + (a, b) = linear_regression(time_perturbed, ln_differeces) + a = round(a, digits = 4) + b = round(b, digits = 4) + plot(time_perturbed, differences, label = "ln(difference in mode1)", xlabel = "Time", ylabel = "Difference", title = "Absolute Difference in States Over Time", msw = 0.0, yscale = :ln, color = :blue, lw = 1.5) + plot!(time_perturbed, exp.(a * time_perturbed .+ b), label = "exp($a*t + $b)", lw = 2, color = :red, linestyle = :dash) + savefig("t/frames/difference-in-states-beta-$beta-log.png") + + println("Saved difference-in-states-beta-$beta.png and difference-in-states-beta-$beta-log.png\n") + println("Lynapov Exponent: ", a) + + # check that solve doesn't explode + # animate_states(state_perturbed, time_perturbed, 0, 1) + return a +end + +# linear regression of the log of the difference +function linear_regression(x, y) + n = length(x) + x̄ = sum(x) / n + ȳ = sum(y) / n + a = sum((x .- x̄) .* (y .- ȳ)) / sum((x .- x̄) .^ 2) + b = ȳ - a * x̄ + return (a, b) +end + +function analyze_equiparition(t_max, beta) + # run a simulation with normal parameters + N = 32 # number of masses + A = 10 # amplitude + modes = 3 # number of modes to plot + final_time = t_max # seconds + dt = 0.05 # seconds + num_steps = Int(final_time / dt) + + t_span = (0.0, final_time) + params = (N, modes, beta, A, dt, num_steps) + s = run_simulation(N, modes, beta, A, dt, num_steps) + + states = s.u + timesteps = s.t + + analyze_energies_of_n_modes([1, 3, 5, 7], states, timesteps, beta) +end + +# my_beta = 0.3 +# estimate_lynapov_exponent(10000, my_beta, 0.001) +# analyze_equiparition(10000, my_beta) + +# function plot_betas_versus_lynapov_exponent(betas, t_max, jitter = 0.001) +# lynapovs = [] +# for b in betas +# lynapov = estimate_lynapov_exponent(t_max, b, jitter) +# push!(lynapovs, lynapov) +# end + +# plot(betas, lynapovs, label = "Lynapov Exponent", xlabel = "Beta", ylabel = "Lynapov Exponent", title = "Lynapov Exponent Over Beta") +# savefig("t/lynapov-over-beta.png") +# end + +function plot_probability_distrubtion_of_mode(energy_of_mode, total_energy, timesteps, beta) + # get the probability distribution of the mode + prob = [] + for i in 1:length(timesteps) + push!(prob, energy_of_mode[i] / total_energy[1]) # energy is conserved + end + + plot(timesteps, prob, label = "Probability of Mode 1", xlabel = "Time", ylabel = "Probability", title = "Probability of Mode 1 Over Time with beta=$beta", ylim = (0, 1)) + savefig("t/probability-mode1-beta-$beta.png") +end + +function analyze_probability_distribution_of_mode(t_max, beta) + # run a simulation with normal parameters + N = 32 # number of masses + A = 10 # amplitude + modes = 3 # number of modes to plot + final_time = t_max # seconds + dt = 0.05 # seconds + num_steps = Int(final_time / dt) + + t_span = (0.0, final_time) + params = (N, modes, beta, A, dt, num_steps) + s = run_simulation(N, modes, beta, A, dt, num_steps) + + states = s.u + timesteps = s.t + + # get the energies of the mode + total_energy, kinetic_energy, potential_energy, total_by_mode, kinetic_by_mode, potential_by_mode = analyze_energies_of_n_modes([1, 3, 5, 7, 9, 11, 13], states, timesteps, beta) + + # get the probability distribution of the mode + # plot_probability_distrubtion_of_mode(total_by_mode[1], total_energy, timesteps, beta) + + # print the time when the probability gets lower than .5 + for i in 1:length(timesteps) + if (total_by_mode[1][i] / total_energy[1]) < 0.6 + println("TIME when probability of mode 1 is less than 0.6 for beta=$beta: ", timesteps[i]) + return timesteps[i] + end + end + + return -1 +end + +# estimate_lynapov_exponent(1000, 0.3, 0.001) + +function plot_pos_at_time_t(t, beta) + # run a simulation with normal parameters + N = 32 # number of masses + A = 10 # amplitude + modes = 3 # number of modes to plot + final_time = t # seconds + dt = 0.05 # seconds + num_steps = Int(final_time / dt) + + t_span = (0.0, final_time) + params = (N, modes, beta, A, dt, num_steps) + s = run_simulation(N, modes, beta, A, dt, num_steps) + + states = s.u + timesteps = s.t + positions = s.u[end][1:2:end] + inital_positions = s.u[1][1:2:end] + + plot(positions, label = "Positions at t=$t", xlabel = "Mass Number", ylabel = "Displacement", title = "Positions of Masses at t=$t, beta=$beta", lw = 2, marker = :circle) + plot!(inital_positions, label = "Initial Positions", lw = 2, marker = :circle) + savefig("t/new/positions-at-t-$t-beta-$beta.png") +end + +function get_breakdown_time(beta, t_find = 3600) + t = analyze_probability_distribution_of_mode(t_find, beta) + if t == -1 + println("Could not find time for beta: ", beta) + return -1 + end + return t +end + + +# plot_pos_at_time_t(1000, 10) +# plot_pos_at_time_t(1000, 0) + + + +# plot_betas_versus_lynapov_exponent(collect(0:1:50), 1000, 0.001) + +# analyze_probability_distribution_of_mode(100000, 2.0) + +# break_down_times = [] +# bs = collect(1:0.5:50) +# for b_s in bs +# t_find = 3600 +# t = analyze_probability_distribution_of_mode(t_find, b_s) +# if t == -1 +# println("Could not find time for beta: ", b_s) +# continue +# end +# push!(break_down_times, t) +# end +# # plot beta vs breakdown time +# plot(bs, break_down_times, label = "Breakdown Time", xlabel = "Beta", ylabel = "Time", title = "Breakdown Time Over Beta") +# savefig("t/breakdown-time-over-beta.png") + +# # plot the log of this +# one_over_breakdown_time = break_down_times .^ (-1) +# (a, b) = linear_regression(bs, one_over_breakdown_time) +# a = round(a, digits = 4) +# b = round(b, digits = 4) +# plot(bs, one_over_breakdown_time, label = "1 / (breakdown time)", xlabel = "Beta", ylabel = "1 / (breakdown time)", title = "Breakdown Time ^ -1 Over Beta", msw = 0.0, color = :blue, lw = 1.5) +# plot!(bs, a * bs .+ b, label = "1 / t = $a * beta + $b", lw = 2, color = :red, linestyle = :dash) +# savefig("t/ln-breakdown-time-over-beta.png") + +# println("Done!") +# # for a range of betas, find the breakdown time and the lynapov exponent +function tmp(betas) + break_down_times = [] + lynapovs = [] + t_find = 350000 + for b in betas + # if b < 0.5 + # t_find = 10000 + # end + t = get_breakdown_time(b, t_find) + if t == -1 + continue + end + t_find = round(Int, t) + 100 + + l = estimate_lynapov_exponent(t_find, b, 0.001) + if l == 0 + println("Lynapov for beta was zero: ", b) + continue + end + push!(break_down_times, t) + push!(lynapovs, l) + end + + # plot lynapov vs breakdown time + scatter(break_down_times, lynapovs, label = "Lynapov Exponent", xlabel = "Breakdown Time", ylabel = "Lynapov Exponent", title = "Lynapov Exponent Over Breakdown Time") + savefig("t/new/new-lynapov-over-breakdown-time.png") + + # plot this over log of lynapovs + ln_lynapovs = log.(lynapovs) + ln_break_down_times = log.(break_down_times) + (a, b) = linear_regression(ln_break_down_times, ln_lynapovs) + a = round(a, digits = 4) + b = round(b, digits = 4) + scatter(ln_break_down_times, ln_lynapovs, label = "ln(Lynapov Exponent)", xlabel = "ln(Breakdown Time)", ylabel = "ln(Lynapov Exponent)", title = "ln(Lynapov Exponent) Over ln(Breakdown Time)", msw = 0.0, color = :blue, lw = 1.5) + plot!(ln_break_down_times, a * ln_break_down_times .+ b, label = "ln(beta) = $a * ln(t) + $b", lw = 2, color = :red, linestyle = :dash) + savefig("t/new/new-ln-lynapov-over-breakdown-time.png") + + # only one log + (a, b) = linear_regression(lynapovs, ln_break_down_times) + a = round(a, digits = 4) + b = round(b, digits = 4) + scatter(lynapovs, ln_break_down_times, label = "ln(Breakdown Time)", xlabel = "Lynapov Exponent", ylabel = "ln(Breakdown Time)", title = "ln(Breakdown Time) Over Lynapov Exponent", msw = 0.0, color = :blue, lw = 1.5) + plot!(lynapovs, a * lynapovs .+ b, label = "ln(t) = $a * beta + $b", lw = 2, color = :red, linestyle = :dash) + savefig("t/new/new-new-ln-breakdown-time-over-lynapov.png") + + + + # plot the lynapoovs to the ^-1 + one_over_breakdown_time = break_down_times .^ (-1) + (a, b) = linear_regression(lynapovs, one_over_breakdown_time) + a = round(a, digits = 4) + b = round(b, digits = 4) + scatter(lynapovs, one_over_breakdown_time, label = "1 / (breakdown time)", xlabel = "Lynapov Exponent", ylabel = "1 / (breakdown time)", title = "1 / (breakdown time) Over Lynapov Exponent", msw = 0.0, color = :blue, lw = 1.5) + plot!(lynapovs, a * lynapovs .+ b, label = "1 / t = $a * beta + $b", lw = 2, color = :red, linestyle = :dash) + savefig("t/new/new-one-over-lynapov-over-breakdown-time.png") + + # plot the lynapov over betas + scatter(betas, lynapovs, label = "Lynapov Exponent", xlabel = "Beta", ylabel = "Lynapov Exponent", title = "Lynapov Exponent Over Beta") + savefig("t/new/new-lynapov-over-beta.png") +end + +tmp(collect(0.3:0.025:10)) + +# estimate_lynapov_exponent(500000, 0.3, 0.001) diff --git a/t/plz.mp4 b/t/plz.mp4 Binary files differdeleted file mode 100644 index a7dbdf7..0000000 --- a/t/plz.mp4 +++ /dev/null diff --git a/t/probability-mode1-beta-0.0.png b/t/probability-mode1-beta-0.0.png Binary files differnew file mode 100644 index 0000000..89030b4 --- /dev/null +++ b/t/probability-mode1-beta-0.0.png diff --git a/t/probability-mode1-beta-0.3-long.png b/t/probability-mode1-beta-0.3-long.png Binary files differnew file mode 100644 index 0000000..1c750fc --- /dev/null +++ b/t/probability-mode1-beta-0.3-long.png diff --git a/t/probability-mode1-beta-0.3.png b/t/probability-mode1-beta-0.3.png Binary files 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